Matrix-associated laser desorption ionization/mass spectrometry (MALDI
/MS) has been used to examine whole bacteria for the presence of a rec
ombinant HIV p26 fusion protein. MALDI/MS, combined with affinity-puri
fication techniques, is also shown to be very useful in monitoring the
enzymatic cleavage of both affinity-bound fusion protein and fusion p
rotein in solution. The combination of mass resolution, sensitivity, a
nd speed of analysis makes MALDI/MS an attractive alternative to SDS-P
AGE. (C) 1995 Academic Press, Inc.