An important molecule in the activation of the complement system in ve
rtebrates is factor B, a serine protease with a molecular mass of 95,0
00. Factor B and the complement component C2 are thought to have arise
n by gene duplication. In mammals and in Xenopus the factor B gene is
linked to the major histocompatibility complex (MHC), whereas in domes
tic fowl it segregates independently of the MHC. Here we describe the
isolation of a cDNA clone coding for factor B in the zebrafish, Brachy
danio rerio. The deduced protein sequence exhibits a characteristic mo
saic structure consisting of the short consensus repeat (SCR), the von
Willebrand factor, and the serine protease domains. The estimated tim
e of factor B and C2 divergence (approximately 350 million years ago),
combined with the fact that C2 has thus far been found only in mammal
s, suggest that the factor B-C2 gene duplication occurred after the di
vergence of mammal-like reptiles from other reptiles and hence also bi
rds. After the duplication, the C2 component evolved significantly fas
ter than factor B. Copyright (C) 1996 Elsevier Science Ltd.