DATA REDUCTION FROM TWINNED RNA CRYSTALS

Citation
Se. Lietzke et al., DATA REDUCTION FROM TWINNED RNA CRYSTALS, Acta crystallographica. Section D, Biological crystallography, 52, 1996, pp. 687-692
Citations number
7
Categorie Soggetti
Crystallography,"Biochemical Research Methods",Biology
ISSN journal
09074449
Volume
52
Year of publication
1996
Part
4
Pages
687 - 692
Database
ISI
SICI code
0907-4449(1996)52:<687:DRFTRC>2.0.ZU;2-K
Abstract
Methods were developed to process diffraction data from epitaxially tw inned crystals. Four programs for data reduction and two display progr ams were developed to augment the data-reduction program XDS [Kabsch ( 1988). J. Appl. Cryst. 21, 916-924]. The programs can be generalized f or use with other data-reduction software that provides the user with a list of the reflections used to determine lattice constants and crys tal orientation. LATTICE_VIEW generates a PDB file containing 'water m olecules' at the reciprocal-space coordinates of the strong spots foun d in the initial data frames. The PDB file is visualized to identify s pots that belong to the same lattice, obtain unit-cell dimensions for a lattice, and assess data quality. VECTOR_MATCH is used to find addit ional spots belonging to a lattice. ACCOUNT4 determines which spots ha ve been processed by XDS. COMFORT discards reflections that are too cl ose to a reflection in another lattice. The display programs provide u seful visual information on the quality of the crystal orientations us ed. Data with an R(merge) of 7.1% at 2.4 Angstrom resolution were obta ined from epitaxially twinned crystals of an RNA dodecamer. The data w ere of sufficient quality to solve the structure with a combination of molecular replacement and single isomorphous replacement methods.