The structure of a trigonal crystal form of porcine pancreatic spasmol
ytic polypeptide (PSP) has been solved by molecular replacement and re
fined to 1.95 Angstrom resolution. Three heavy-atom derivatives were p
repared, giving unbiased phase information, which was used in the mode
l building of the protein molecules. The final conventional R value is
19.8% with the inclusion of 183 water molecules. PSP crystallizes as
a dimer in space group P3(1)21 with a non-crystallographic twofold axi
s relating the monomers. The monomer consists of two very similar doma
ins each composed of three loop regions. Two clefts are found in the m
onomer, one in each domain, that are proposed as possible substrate-bi
nding sites. Important interactions have been identified in the propos
ed substrate-binding sites, where conserved water molecules probably m
imic the hydrophilic positions of the substrate. The estimated cleft s
ize is 9 x 9 x 12 Angstrom. Analysis of the charge distribution within
the clefts, by an electrostatic potential calculation, shows the clef
ts to be essentially non-charged.