The eukaryotic 20S proteasome is known to associate with the IfN gamma
-inducible regulator PA28. We analyzed the kinetics of product generat
ion by 20S proteasomes with and without PA28. In the absence of PA28,
the 20S proteasome rapidly generates peptides that have been cleaved o
nly once, while internal fragments accumulate only slowly. In the pres
ence of PA28, products generated by two flanking cleavages appear imme
diately as main products while the generation of single-cleavage produ
cts is strongly reduced. Kinetic data support a PA28-induced, coordina
ted double-cleavage mechanism. In particular, degradation of peptides
derived from mouse cytomegalovirus pp89 and JAK1 kinase in the presenc
e of PA28 leads to strongly enhanced production of the respective majo
r histocompatibility complex ligands and potential precursors. These r
esults show that PA28 profoundly alters the cleavage mechanism of the
proteasome and appears to optimize the generation of dominant T-cell e
pitopes.