Mechanisms that allow potentially autoreactive T cells to escape centr
al tolerance and persist in the peripheral lymphoid organs of healthy
individuals are poorly defined. It has been proposed that such cells a
re specific for epitopes which normally are not well presented to the
immune system or, in other words, are cryptic. We have used synthetic
peptides to define potential T cell epitopes within the N-terminal por
tion of myelin basic protein (MBP). These were defined in terms of the
ir relative affinity for the MHC-restriction element 1-A(U) and their
ability to activate T cells in mice of the H-2(U) haplotype. Three epi
topes were identified, one of which corresponded to the known dominant
N-terminal epitope (Ac1-9). The other two epitopes (9-20 and 5-20) bo
und to their MHC-restriction element with relatively high affinity but
were cryptic, as defined by the poor response to these epitopes follo
wing immunization with intact MBP. Even the longer of these two epitop
es did not induce autoimmune encephalomyelitis in H-2(U) mice. These r
esults demonstrate that antigen processing can control both the induct
ion of and effector function of autoreactive T cells, and is therefore
a principal mechanism involved in limiting the autoreactive T cell re
pertoire.