Much population genetics and evolution theory depends on knowledge of
genomic mutation rates and distributions of mutation effects for fitne
ss, but most information comes from a few mutation accumulation experi
ments in Drosophila in which replicated chromosomes are sheltered from
natural selection by a balancer chromosome. I show here that data fro
m these experiments imply the existence of a large class of minor viab
ility mutations with approximately equivalent effects. However, analys
is of the distribution of viabilities of chromosomes exposed to EMS mu
tagenesis reveals a qualitatively different distribution of effects la
cking such a minor effects class. A possible explanation for this diff
erence is that transposable element insertions, a common class of spon
taneous mutation event in Drosophila, frequently generate minor viabil
ity effects. This explanation would imply that current estimates of de
leterious mutation rates are not generally applicable in evolutionary
models, as transposition rates vary widely. Alternatively, much of the
apparent decline in viability under spontaneous mutation accumulation
could have been nonmutational, perhaps due to selective improvement o
f balancer chromosomes. This explanation accords well with the data an
d implies a spontaneous mutation rate for viability two orders of magn
itude lower than previously assumed, with most mutation load attributa
ble to major effects.