In farm animals, associations between individually identified genotype
s and the values of performance traits were investigated since more th
an 30 years. The topic of research was largely determined by the Veter
inary Institute of the University of Gottingen. For the experimental a
nalysis of gene loci, for which allelic variants are connected with al
terations of trait values, new techniques of DNA diagnostic were of cr
ucial significance, Thereby, two approaches of analysis of quantitativ
e trait loci (QTL) can be distinguished, By considering informative gr
oups of animals, the first approach uses marker loci in order to trace
the inheritance of their alleles and thus simultaneously the transfer
of specific chromosome sections to individuals of the offspring gener
ation. By this manner, the associations between the marked chromosome
regions and trait values are calculated. Results are shown for example
s from experiments with milk performance in cattle and with fatting an
d carcass traits in pigs. In the second approach, genetic effects of t
rait values are assigned to distinct genes or gene clusters. For this
purpose, variants of the gene structure are identified and then analys
ed for their effects on the formation of specific trait values. As an
example of such a functional analysis of single gene positions, the mi
lk protein coding genes in cattle are given. From the data we see that
DNA techniques allow a direct access to genotypic information and so
far-reaching potential for tracing back effects on trait values to sin
gle nucleotide differences. However, such a functional analysis need s
pecific test systems which are able to consider the complex net work b
etween single gene effects and the multifactorially caused values of p
erformance traits. This will be possible by proceedings, which identif
y the gene effects in vivo and the balancing forces of haplotype combi
nations in populations. Genetic parameters of such investigations are
needed for farm animal populations before variants of genotypes are ap
plied for breeding.