Seventy-four randomly sampled Iyers, a Brahmin population of Tamil Nad
u and preachers and followers of the Advaita philosophy, living in Mad
urai, were studied for their HLA-A, HLA-B, HLA-C, HLA-DR, HLA-DQ, C4A,
C4B, and BF polymorphisms and compared with other populations. HLA al
leles A1, A11.1, A24, A33, B35, B44, B51, B52, B57, Cw4, Cw6, Cw7, DR4
, DR7, DR8, DR10, DR11, DR15, and DQ1 and C4A3, C4A*4, C4A*6, C4A*Q0,
C4B1, and BF*S were represented in 15% of the samples studied. HLA a
lleles A25, A69, Cw3, Cw8, B45, B14, B39, B18, B50, and B56 were not i
dentified. Various populations of Tamil Nadu were compared, but the Iy
ers of Madurai formed a separate cluster with Sourashtrans of Madurai
and major group 4 (various Brahmin populations of Tamil Nadu); hill tr
ibes (Irulas, Malayalis, and Badagas) and caste groups in the plains (
Kallars and Nadars) formed distinct clusters. Comparison of the Iyers
with other Indian and world populations revealed that Iyers form a dis
tinct branch of the Indo-European and Central Asian tree. The Bhargava
s of Lucknow, another Brahmin caste group from Uttar Pradesh, did not
cluster with the Iyers but clustered with Central Asian populations. T
he Punjabis of Delhi clustered with European and Middle Eastern popula
tions. Studies on two-locus haplotypes of Iyers revealed unique haplot
ypes in them (A26-B8, A33-B44, A33-Cw7, A1-B57, B8-DR3, B44-DR7, DR7-D
Q2, C4A32-C4B*Q0, and C4A*6-C4B*2), most of which were not identified
in the Bhargavas of Lucknow and the Punjabis of Delhi. Thus it is pos
sible that various Brahmin populations of India differ in their origin
, migration, and settlement, although all of them adopted Hinduism in
ancient times. A comparison of haplotypes in Iyers with the world popu
lation reveals a sharing of haplotypes with Southeast Asian population
s. This implies that the ancestors of the Iyers of Madurai, who origin
ated in the Eurasian steppes or Central Asia, might have migrated to I
ndia through Southeast Asia, thus developing the prevalent haplotypes
en route.