P. Taibitronche et al., EVIDENCE FOR STRUCTURAL ELASTICITY OF CLASS-A BETA-LACTAMASES IN THE COURSE OF CATALYTIC TURNOVER OF THE NOVEL CEPHALOSPORIN CEFEPIME, Journal of the American Chemical Society, 118(32), 1996, pp. 7441-7448
The mechanism of hydrolysis of cefepime, a novel cephalosporin, by the
class A TEM(pUC19) beta-lactamase has been investigated. Models for t
he active-site binding of this antibiotic indicate severe steric inter
actions between the active site of the enzyme and the C-7 beta functio
n of cefepime. Specific interactions with the side-chain functions of
Pro-167 and Asn-170, amino acids present in the Omega-loop spanning re
sidues 164-179, have been singled out as important in the interactions
with the antibiotic. These interactions displace the hydrolytic water
(Wat-712) from its preferred position for the deacylation step. These
observations are consistent with experimental evidence that deacylati
on is the rate-limiting step in the turnover of cefepime by this beta-
lactamase. Furthermore, it has been shown in circular-dichroic measure
ments that hydrolysis of cefepime by this beta-lactamase is accompanie
d by an unprecedented relaxation of the structure of the enzyme in ord
er to accommodate the bulky C-7 beta side chain of the antibiotic in t
he active site. These findings are in good agreement with dynamics sim
ulations of the structure of the acyl-enzyme intermediate, which suppo
rt the possibility for the structural relaxation of the protein once t
his intermediate forms. The class C beta-lactamase Q908R, lacking the
Psi-loop structural motif, turns over cefepime, and the kinetic parame
ters for this process were evaluated. In contrast to the class A beta-
lactamase which we studied, the kinetics were sufficiently fast that c
ircular-dichroic experiments with the Q908R enzyme during hydrolysis o
f cefepime could not be carried out. Two mutant variants of the class
A TEM(pUC19) beta-lactamase, Asp-179-Gly and Arg-164-Asn, were prepare
d to explore whether an enlargement of the active site would facilitat
e turnover of cefepime. Both mutant enzymes showed improved interactio
ns with cefepime, consistent with our expectations. Kinetic analyses f
or turnover of cefepime by the parental enzyme and both of its mutant
derivatives are presented.