The non-A beta component of Alzheimer's disease amyloid (NAC) is copur
ified with amyloid from the brain tissue of Alzheimer's disease victim
s and is immunohistochemically localized to amyloid fibrils. NAC is a
hydrophobic peptide fragment from the NAC precursor protein (NACP/alph
a-synuclein) that is localized to presynaptic terminals. We used a pol
ymorphic dinucleotide repeat sequence in a genomic clone of NACP for g
enetic association and linkage studies. Screening of Alzheimer's disea
se families failed to establish linkage between NACP and Alzheimer's d
isease. Nevertheless, one of the NACP polymorphisms (NACP allele 2) wa
s shown to have significant association with healthy elderly control i
ndividuals with apolipoprotein E risk. This may indicate a possible pr
otective function of the allele.