Pycnodysostosis, an autosomal recessive osteochondrodysplasia characte
rized by osteosclerosis and short stature, maps to chromosome 1q21. Ca
thepsin K, a cysteine protease gene that is highly expressed in osteoc
lasts, localized to the pycnodysostosis region. Nonsense, missense, an
d stop codon mutations in the gene encoding cathepsin K were identifie
d in patients. Transient expression of complementary DNA containing th
e stop codon mutation resulted in messenger RNA but no immunologically
detectable protein. Thus, pycnodysostosis results from gene defects i
n a lysosomal protease with highest expression in osteoclasts. These f
indings suggest that cathepsin K is a major protease in bone resorptio
n, providing a possible rationale for the treatment of disorders such
as osteoporosis and certain forms of arthritis.