In a species of Australian native rat, Rattus villosissimus, which exp
eriences extreme population fluctuations and possibly episodes of loca
l inbreeding in the wild, generations of inbreeding in a laboratory co
lony led to altered skull shape and increased fluctuating asymmetry in
some skeletal characters, Although inbreeding was closely associated
with the number of generations in captivity, the effect of inbreeding
after controlling statistically for the generation number was to decre
ase skull length and width, The effect of generations in captivity aft
er controlling for inbreeding was to increase skull length and width,
The joint effect of these confounded determinants was to produce rats
with increasingly broad and short skulls through generations of inbree
ding, Developmental anomalies of the incisors and feet appeared in the
population, The average effects of inbreeding on fluctuating asymmetr
y were not strong, as most inbred and noninbred rats were not detectab
ly asymmetric. Asymmetry appeared to be a threshold phenomenon, as sig
nificantly asymmetric animals were more prevalent among the more highl
y inbred rats of later generations, We detected no trend for a lesseni
ng impact of inbreeding after many generations, as would have been exp
ected if selection had been purging the population of its genetic load
, Individual heterozygosity across five polymorphic allozyme loci was
correlated with size and asymmetry metrics, but only in so far as coul
d be accounted for by the correlation of sample heterozygosity with th
e level of inbreeding and the effect of inbreeding on size and asymmet
ry.