The T-box genes comprise an ancient family of putative transcription f
actors conserved across species as divergent as Mus musculus and Caeno
rhabditis elegans. All T-box gene products are characterized by a nove
l 174-186-amino acid DNA binding domain called the T-box that was firs
t discovered in the polypeptide products of the mouse T locus and the
Drosophila melanogaster optomotor-blind gene. Earlier studies allowed
the identification of five mouse T-box genes, T, Tbx1-3 and Tbr1, that
all map to different chromosomal locations and are expressed in uniqu
e temporal and spatial patterns during embryogenesis. Here, we report
the discovery of three new members of the mouse T-box gene family, nam
ed Tbx4, Tbx5, and Tbx6. Two of these newly discovered genes, Tbx4 and
Tbx5, were found to be tightly linked to previously identified T-box
genes. Combined results from phylogenetic, linkage, and physical mappi
ng studies provide a picture for the evolution of a T-box subfamily by
unequal crossing over to form a two-gene cluster that was duplicated
and dispersed to two chromosomal locations. This analysis suggests tha
t Tbx4 and Tbx5 are cognate genes that diverged apart from a common an
cestral gene during early vertebrate evolution.