This paper presents a case study of using a multicompartment isoelectr
ic focusing apparatus to determine the isoelectric points and focus pr
eparative quantities of brain derived neurotrophic factor (BDNF) and n
eurotrophic factor 3 (NT3). A separation of PEGylated from unPEGylated
forms of granulocyte colony stimulating factor (G-CSF) is described a
s well. Both BDNF and NT3 have substantially higher pi values in this
system than is predicted from sequenced,based modeling. Although PEGyl
ated forms of G-CSF can be separated from the unPEGylated forms, separ
ation of protein with differing degrees of PEGylation was not achieved
. The paper additionally demonstrates that this technique can be used
simultaneously as an analytical and preparative tool, eliminating the
need for analytical IEF gels.