When populations are partially inbred due to the population structure
or to a mixed mating system like partial self-fertilization, some indi
viduals will be more inbred than others. This heterogeneity among indi
viduals in the history of inbreeding can greatly complicate the interp
retation of measures of quantitative genetic variability when the trai
ts studied exhibit inbreeding depression. Partial inbreeding can also
bias measures of phenotypic selection toward the detection of strong d
irectional and stabilizing selection. In this paper, data are presente
d from several inbreeding experiments conducted on two partially selfi
ng, annual populations of the monkeyflower Mimulus guttatus that show
that the means of many of the morphological and phenological traits me
asured were affected by inbreeding. These findings imply that estimate
s of heritabilities and additive genetic covariances would not reflect
the potential for these populations to respond to selection. Phenotyp
ic selection analyses conducted on naturally occurring plants, involvi
ng linear regressions of relative seed production on the traits, revea
led significant directional selection on many of the same quantitative
traits measured in the inbreeding studies. However, when the same sel
ection analyses were performed on plants with known histories of inbre
eding, part of the statistical relationship between relative seed numb
er and the traits was found to be due to the mating system: inbred ind
ividuals had both lower seed production and different mean values for
the traits than outcrossed individuals. It is also shown, with a hypot
hetical example, that partial inbreeding can bias measures of stabiliz
ing selection toward the detection of strong stabilizing selection. Pa
rtial inbreeding therefore tends to make directional and stabilizing s
election appear stronger than it is, and it may be that natural select
ion in the wild is actually weaker than many studies of partially inbr
ed species suggest.