LIGAND-BINDING TO HEME-PROTEINS .6. INTERCONVERSION OF TAXONOMIC SUBSTATES IN CARBONMONOXYMYOGLOBIN

Citation
Jb. Johnson et al., LIGAND-BINDING TO HEME-PROTEINS .6. INTERCONVERSION OF TAXONOMIC SUBSTATES IN CARBONMONOXYMYOGLOBIN, Biophysical journal, 71(3), 1996, pp. 1563-1573
Citations number
82
Categorie Soggetti
Biophysics
Journal title
ISSN journal
00063495
Volume
71
Issue
3
Year of publication
1996
Pages
1563 - 1573
Database
ISI
SICI code
0006-3495(1996)71:3<1563:LTH.IO>2.0.ZU;2-9
Abstract
The kinetic properties of the three taxonomic A substates of sperm wha le carbonmonoxy myoglobin in 75% glycerol/buffer are studied by flash photolysis with monitoring in the infrared stretch bands of bound CO a t nu(A(0)) approximate to 1967 cm(-1), nu(A(1)) approximate to 1947 cm (-1), and nu(A(3)) approximate to 1929 cm(-1) between 60 and 300 K. Be low 160 K the photodissociated CO rebinds from the heme pocket, no int erconversion among the A substates is observed, and rebinding in each A substate is nonexponential in time and described by a different temp erature-independent distribution of enthalpy barriers with a different preexponential. Measurements in the electronic bands, e.g., the Soret , contain contributions of all three A substates and can, therefore, b e only approximately modeled with a single enthalpy distribution and a single preexponential. The bond formation step at the heme is fastest for the A(0) substate, intermediate for the A(1) substate, and slowes t for A(3). Rebinding between 200 and 300 K displays several processes , including geminate rebinding, rebinding after ligand escape to the s olvent, and interconversion among the A substates. Different kinetics are measured in each of the A bands for times shorter than the charact eristic time of fluctuations among the A substates. At longer times, f luctuational averaging yields the same kinetics in all three A substat es. The interconversion rates between A(1) and A(3) are determined fro m the time when the scaled kinetic traces of the two substates merge. Fluctuations between A(1) and A(3) are much faster than those between A(0) and either A(1) or A(3), so A(1) and A(3) appear as one kinetic s pecies in the exchange with A(0). The maximum-entropy method is used t o extract the distribution of rate coefficients for the interconversio n process A(0) <----> A(1) + A(3) from the flash photolysis data. The temperature dependencies of the A substate interconversion processes a re fitted with a non-Arrhenius expression similar to that used to desc ribe relaxation processes in glasses. At 300 K the interconversion tim e for A(0) <----> A(1) + A(3) is 10 mu s, and extrapolation yields sim ilar to 1 ns for A(1) <----> A(3). The pronounced kinetic differences imply different structural rearrangements. Crystallographic data suppo rt this conclusion: They show that formation of the A(0) substate invo lves a major change of the protein structure; the distal histidine rot ates about the C-alpha-C-beta bond, and its imidazole sidechain swings out of the heme pocket into the solvent, whereas it remains in the he me pocket in the A(1) <----> A(3) interconversion. The fast A(1) <---- > A(3) exchange is inconsistent with structural models that involve di fferences in the protonation between A(1) and A(3).