Jb. Johnson et al., LIGAND-BINDING TO HEME-PROTEINS .6. INTERCONVERSION OF TAXONOMIC SUBSTATES IN CARBONMONOXYMYOGLOBIN, Biophysical journal, 71(3), 1996, pp. 1563-1573
The kinetic properties of the three taxonomic A substates of sperm wha
le carbonmonoxy myoglobin in 75% glycerol/buffer are studied by flash
photolysis with monitoring in the infrared stretch bands of bound CO a
t nu(A(0)) approximate to 1967 cm(-1), nu(A(1)) approximate to 1947 cm
(-1), and nu(A(3)) approximate to 1929 cm(-1) between 60 and 300 K. Be
low 160 K the photodissociated CO rebinds from the heme pocket, no int
erconversion among the A substates is observed, and rebinding in each
A substate is nonexponential in time and described by a different temp
erature-independent distribution of enthalpy barriers with a different
preexponential. Measurements in the electronic bands, e.g., the Soret
, contain contributions of all three A substates and can, therefore, b
e only approximately modeled with a single enthalpy distribution and a
single preexponential. The bond formation step at the heme is fastest
for the A(0) substate, intermediate for the A(1) substate, and slowes
t for A(3). Rebinding between 200 and 300 K displays several processes
, including geminate rebinding, rebinding after ligand escape to the s
olvent, and interconversion among the A substates. Different kinetics
are measured in each of the A bands for times shorter than the charact
eristic time of fluctuations among the A substates. At longer times, f
luctuational averaging yields the same kinetics in all three A substat
es. The interconversion rates between A(1) and A(3) are determined fro
m the time when the scaled kinetic traces of the two substates merge.
Fluctuations between A(1) and A(3) are much faster than those between
A(0) and either A(1) or A(3), so A(1) and A(3) appear as one kinetic s
pecies in the exchange with A(0). The maximum-entropy method is used t
o extract the distribution of rate coefficients for the interconversio
n process A(0) <----> A(1) + A(3) from the flash photolysis data. The
temperature dependencies of the A substate interconversion processes a
re fitted with a non-Arrhenius expression similar to that used to desc
ribe relaxation processes in glasses. At 300 K the interconversion tim
e for A(0) <----> A(1) + A(3) is 10 mu s, and extrapolation yields sim
ilar to 1 ns for A(1) <----> A(3). The pronounced kinetic differences
imply different structural rearrangements. Crystallographic data suppo
rt this conclusion: They show that formation of the A(0) substate invo
lves a major change of the protein structure; the distal histidine rot
ates about the C-alpha-C-beta bond, and its imidazole sidechain swings
out of the heme pocket into the solvent, whereas it remains in the he
me pocket in the A(1) <----> A(3) interconversion. The fast A(1) <----
> A(3) exchange is inconsistent with structural models that involve di
fferences in the protonation between A(1) and A(3).