Alkaptonuria (AKU) occupies a unique place in the history of human gen
etics because it was the first disease to be interpreted as a mendelia
n recessive trait by Garrod in 1902. Alkaptonuria is a rare metabolic
disorder resulting from loss of homogentisate 1,2 dioxygenase (HGO) ac
tivity. Affected individuals accumulate large quantities of homogentis
ic acid, an intermediary product of the catabolism of tyrosine and phe
nylalanine, which darkens the urine and deposits in connective tissues
causing a debilitating arthritis. Here we report the cloning of the h
uman HGO gene and establish that it is the AKU gene. We show that HGO
maps to the same location described for AKU, illustrate that HGO harbo
urs missense mutations that cosegregate with the disease, and provide
biochemical evidence that at least one of these missense mutations is
a loss-of-function mutation.