Rj. Bergeron et al., POLYAMINE ANALOG REGULATION OF NMDA MK-801 BINDING - A STRUCTURE-ACTIVITY STUDY, Journal of medicinal chemistry, 39(26), 1996, pp. 5257-5266
A series of analogues and homologues of spermine were synthesized, and
their impact on MK-801 binding to the N-methyl-D-aspartate (NMDA) rec
eptor was evaluated. These tetraamines encompass both linear and cycli
c compounds. The linear molecules include norspermine, N-1,N-11-diethy
lnorspermine, N-1,N-13-bis(2,2,2-trifluoroethyl)spermine, homospermine
, and N-1,N-14-diethylhomospermine. The cyclic tetraamines consist of
the piperidine analogues N-1-N-3-bis(4-piperidinyl)-1,3-diaminopropane
, N-1,N-4-bis(4-piperidinyl)-1,4-diaminobutane, -1,N-4-bis(4-piperidin
ylmethyl)-1,4-diaminobutane, and ,N-4-bis[2-(4-piperidinyl)ethyl]-1,4-
diaminobutane and the pyridine analogues N-1-N-3-bis(4-pyridyl)-1,3-di
aminopropane, N-1,N-4-bis(4-pyridyl)-1,4-diaminobutane, N-1,N-4-bis(4-
pyridylmethyl)-1,4-diaminobutane, and -1,N-4-bis[2-(4-pyridyl)-ethyl]-
1,4-diaminobutane. This structure-activity set makes it possible to es
tablish the importance of charge, intercharge distance, and terminal n
itrogen substitution on polyamine-regulated MK-801 binding in the NMDA
channel. Four families of tetraamines are included in this set: norsp
ermines, spermines, homospermines, and tetraazaoctadecanes. Calculatio
ns employing a SYBYL modeling program revealed that the distance betwe
en terminal nitrogens ranges between 12.62 and 19.61 Angstrom. The tet
raamines are constructed such that within families cyclics and acyclic
s have similar lengths but different nitrogen pK(a)'s and thus differe
nt protonation, or charge, states at physiological pH. The pK(a) value
s-for all nitrogens of each molecule and its protonation state at phys
iological pH are described. The modifications at the' terminal nitroge
ns include introduction of ethyl and beta,beta,beta-trifluoroethyl gro
ups and incorporation into piperidinyl or pyridyl systems. The studies
clearly indicate that polyamine length, charge, and terminal nitrogen
substitution have a significant effect on how the tetraamine regulate
s MK-801 binding to the NMDA receptor. Thus a structure-activity basis
set on which future design of MK-801 agonists and antagonists can be
based is now available.