The microsporidian Encephalitozoon cuniculi can infect a wide variety
of mammals including man. In this study, E. cuniculi isolates of anima
l origin were compared with 6 isolates obtained from HIV-infected pati
ents. Based on results of Western blot analysis, random amplified poly
morphic DNA (RAPD) and the sequence of the rDNA internal transcribed s
pacer (ITS) the isolates were classified into 3 groups with the repeat
ed element 5'GTTT-3' in the ITS being a reliable genetic marker. Five
isolates from Swiss patients were found to be homologous to isolates f
rom Swiss rabbits (strain I). The sixth isolate from a patient from Me
xico differed by all methods and could be attributed to E. cuniculi st
rain III that has been described from 2 dogs from the USA. All of thes
e isolates were distinguished from isolates from blue foxes from Norwa
y (strain II). Intraspecific nucleotide divergence of the SSU rRNA gen
e of E. cuniculi belonging to the 3 strains was in the same low range
(0 . 00-0 . 15%) as was found for the corresponding sequence of 2 E. h
ellem isolates. Groups of 2 rabbits were infected by oral inoculation
of 10(7) E. cuniculi spores (2 isolates from strain I of human and rab
bit origin, 1 from strain III) as shown by antibody responses and the
re-isolation of the parasites from brain material. The results provide
further evidence that per oral transmission of the parasite between v
arious hosts is feasible.