Kg. Ragunathan et Hj. Schneider, SUPRAMOLECULAR CHEMISTRY .68. NUCLEOTIDE COMPLEXES WITH AZONIACYCLOPHANES CONTAINING PHENYL-UNIT, BIPHENYL-UNIT OR BIPYRIDYL-UNIT, Perkin transactions. 2, (12), 1996, pp. 2597-2600
Three cyclophanes (1-3) with p-phenyl, p-biphenyl- and m-bipyridyl spa
cers between diethylenetriamine units are studied by NMR titrations in
water (D2O) with naturally occurring mononucleotides in the form of m
onophosphates. The biphenyl host 1 shows association constants K (in m
ol dm(-3) units) of 2200 with AMP5', 1270 with the isomeric AMP3', and
smaller constants with G, C and U derivatives. An exception is GMP5'
with 3, which in contrast to most host compounds shows a four-fold str
onger binding than AMP5'. Thymidine (TMP5') is complexed with K = 2050
dm(3) mol(-1); the intracavity immersion of the T methyl substituent
is visible also in the observed upheld NMR shifts. With the smaller ho
sts 2 and 3, constants of approximately 100-200 dm(3) mol(-1) are obse
rved, indicating essentially salt bridge contributions. Structural con
clusions are supported by the observed NMR shieldings and by selected
molecular mechanics calculations.