Sr. Durell et A. Wallqvist, ATOMIC-SCALE ANALYSIS OF THE SOLVATION THERMODYNAMICS OF HYDROPHOBIC HYDRATION, Biophysical journal, 71(4), 1996, pp. 1695-1706
Molecular dynamics simulations are used to model the transfer thermody
namics of krypton from the gas phase into water, Extra long, nanosecon
d simulations are required to reduce the statistical uncertainty of th
e calculated ''solvation'' enthalpy to an acceptable level. Thermodyna
mic integration is used to calculate the ''solvation'' free energy, wh
ich together with the enthalpy is used to calculate the ''solvation''
entropy, A comparison series of simulations are conducted using a sing
le Lennard-Jones sphere model of water to identify the contribution of
hydrogen bonding to the thermodynamic quantities. In contrast to the
classical ''iceberg'' model of hydrophobic hydration, the favorable en
thalpy change for the transfer process at room temperature is found to
be due primarily to the strong van der Waals interaction between the
solute and solvent, Although some stabilization of hydrogen bonding do
es occur in the solvation shell, this is overshadowed by a destabiliza
tion due to packing constraints. Similarly, whereas some of the unfavo
rable change in entropy is attributed to the reduced rotational motion
of the solvation shell waters, the major component is due to a decrea
se in the number of positional arrangements associated with the transl
ational motions.