Export of cargo from the ER occurs through the formation of 60-70-nm C
OPII-coated vesicular carriers. We have applied serial-thin sectioning
and stereology to quantitatively characterize the three-dimensional o
rganization of ER export sites in vivo and in vitro. We find that ER b
uds in vivo are nonrandomly distributed, being concentrated in regiona
l foci we refer to as export complexes. The basic organization of an e
xport complex can be divided into an active COPII-containing budding z
one on a single ER cisterna, which is adjacent to budding zones found
on distantly connected ER cisternae. These budding foci surround and f
ace a central cluster of morphologically independent vesicular-tubular
elements that contain COPI coats involved in retrograde transport. Ve
sicles within these export complexes contain concentrated cargo molecu
les. The structure of vesicular-tubular clusters in export complexes i
s particularly striking in replicas generated using a quick-freeze, de
ep-etch approach to visualize for the first time their three-dimension
al organization and cargo composition. We conclude that budding from t
he ER through recruitment of COPII is confined to highly specialized e
xport complexes that topologically restrict anterograde transport to r
egional foci to facilitate efficient coupling to retrograde recycling
by COPI.