This article summarizes recent research at the molecular and host popu
lation level for the two major mosquito-borne flaviviral pathogens, de
ngue and Japanese encephalitis. Although the flavivirus genome is comp
letely known and complete RNA genomes have been synthesized which are
capable of replicating whole viruses, the function of most genes is un
clear. Current work focuses on understanding non-structural genes. The
se are translated into enzymes which cleave the polyprotein, replicate
RNA, and then wind and package it into viral particles, A remarkable
breakthrough in host defence against viruses has been achieved by inse
rting a small piece of negative strand dengue RNA into a mosquito. Thi
s 'antisense' RNA prevents normal replication. Meanwhile, dengue fever
continues to expand as a human disease problem; outbreaks were report
ed as soon as US troops landed in both Somalia and Haiti. Reasons why
dengue hemorrhagic fever occurs in some but not all persons infected w
ith a second dengue virus continue to puzzle researchers. It is now cl
ear that epidemics of dengue hemorrhagic fever in the American tropics
are not caused by indigenous viruses but by viruses which were import
ed from Southeast Asia. Japanese encephalitis has spread to Ball, Indo
nesia. The good news for travellers is that a new live-attenuated Japa
nese encephalitis vaccine produced in China has been shown to be 98% p
rotective against naturally occurring disease and, unlike the current
mouse brain-derived vaccine, has very low rates of side reactions.