Transfer RNA recognition was used as leit-motiv in the illustration of
possible links between a hypothetical primordial RNA world and the co
ntemporary DNA world. In an RNA world, 'proto- tRNA' could have functi
oned as replication origin and as primitive telomere. Possibly, this p
rimitive structure is preserved in a 'universal substrate' for modern
tRNA-specific enzymes. The combination of acceptor stem and T arm (plu
s a linker) was finally revealed as sufficient for the recognition by
prokaryotic and eukaryotic RNase P, as well as other tRNA enzymes. In
modern life forms, a tRNA-like element in viral RNAs still serves as r
eplication origin, and furthermore, the recognition of similar structu
res as cryptic promoters is universally conserved for template-depende
nt RNA polymerases. Another common property of modern polymerases is t
heir high, but clearly limited and condition-dependent substrate speci
ficity. Very likely, also substrate recognition by primitive polymeras
es was not more stringent, and this lead to the ocurrence of mixed nuc
leic acids as intermediates in the transition from genomic RNA to cont
emporary genomic DNA.