Significantly less recombination was observed for the female gametes t
han for the male gametes in one individual of maritime pine (Pinus pin
aster Ait.). Two segregating mapping samples of the same hybrid tree w
ere used for genomic mapping. One sample consisted of diploid tissues
from 192 F-2 seedlings. The other sample consisted of megagametophytes
(haploid maternally derived nutritive tissue) extracted from 156 germ
inated F-2 seedlings. A total of 94 RAPD markers covering 65 per cent
of the genome was used for constructing the maps with both samples. Co
mparison for the total length of the two maps shows that meiotic tic r
ecombination differs between the haploid and the diploid mapping sampl
es. Map distances in the diploid mapping sample were on average 14 per
cent larger than in the megagametophyte sample, corresponding to a 28
per cent greater rate of recombination in the pollen parent. Departur
e from homogeneity of recombination rate was also tested by marker int
erval using a likelihood-based method. Inference for greater meiotic r
ecombination during male gametogenesis was verified analytically. A ge
nome-wide reduction in the female gamete's recombination rate in gymno
sperms presents interesting evolutionary implications, as this is exac
tly the opposite trend to that in the angiosperms studied so far. Dire
ct consequences for pine tree breeding are also discussed.