Ionizing radiation is expected to produce mutants with deletions or ot
her chromosomal rearrangements. These mutants are useful for a variety
of purposes, such as creating null alleles and cloning genes whose ex
istence is known only from their mutant phenotype; however, only a few
mutations generated by ionizing radiation have been characterized at
the molecular level in Arabidopsis thaliana. Twenty fast neutron-gener
ated alleles of the Arabidopsis HY4 locus, which encodes a blue light
receptor, CRY1, were isolated and characterized. Nine of the mutant al
leles displayed normal genetic behavior. The other 11 mutant alleles w
ere poorly transmitted through the male gametophyte and were lethal in
homozygous plants. Southern blot analysis demonstrated that alleles o
f the first group generally contain small or moderate-sized deletions
at HY4, while alleles of the second group contain large deletions at t
his locus. These results demonstrate that fast neutrons can produce a
range of deletions at a single locus in Arabidopsis. Many of these del
etions would be suitable for cloning by genomic subtraction or represe
ntational difference analysis. The results also suggest the presence o
f an essential locus adjacent to HY4.