Amongst the coccolithophorids, Emiliania huxleyi is the most successfu
l and can form large scale blooms under a variety of environmental con
ditions. This implies extensive genetic variation within this taxon. P
hysiological, morphological and antigenic differences between clonal i
solates support this suggestion. Our investigations into the level of
genetic variation within the morphological species concept of E. huxle
yi indicate that it is such a young taxon that sequence comparisons of
both coding and non-coding regions cannot resolve the issue of how ma
ny separate taxonomic entities are involved. However, PCR-based geneti
c fingerprinting techniques do reveal extensive genetic diversity, bot
h on a global scale and within major bloom populations in both space a
nd time, Cell DNA content can also separate cells with morphotype A co
ccoliths from those with morphotype B coccoliths. Taken together with
physiological and morphological evidence, these data suggest that the
morphotypes of E. huxleyi should be separated at the variety level. We
have used both nuclear and plastid rRNA sequence comparisons to confi
rm the place of E. huxleyi within the Haptophyta.