Direct interphase cytogenetic analysis was performed on nuclei of meta
static effusions from breast cancer using fluorescence ill situ hybrid
ization (FISH). DNA probes specific for repetitive pericentromeric reg
ions on chromosomes 6, 8, 17, and human midi-satellite probe specific
for one locus on the short arm of chromosome 1 were used to determine
chromosome copy numbers in interphase tumor cells. The analysis showed
cytogenetic heterogeneity in most nuclei examined with multiple subpo
pulations and a range of 0-6 chromosome signals per cell. The presence
of subclones in these fluids, their correlation with highly malignant
phenotypes and the diagnostic and prognostic applications of this met
hod is discussed.