The S'-subsite specificity of trypsin has been studied by comparing th
e non-specific acyl donors Mal-Phe-OCam (Mal = maleyl, OCam = carboxam
idomethyl ester), Mal-Gly-Phe-OCam and Mal-Phe-OMe (OMe = methyl eater
) with the specific substrate Bz-Arg-OEt (Bz = benzoyl, OEt = ethyl ea
ter). Various nucleophilic amino components were chosen to determine S
'(1)-P'(1) interactions depending on the acyl donor used. The data obt
ained underline that there are no significant differences in the nucle
ophile specificity for specific and non-specific acyl donors, but with
the latter a slightly better acceptance of the nucleophiles was found
. Independent of the acyl donor used, a preference for methionine and
arginine-in the S'(1)-subsite of trypsin could be established, The res
ults provide evidence that the binding site of the non-specific substr
ates in the active site of trypsin is not different to that of Bz-Arg-
OEt.