G. Iliadis et al., ASPARTIC PROTEINASES - FOURIER-TRANSFORM INFRARED SPECTROSCOPIC STUDIES OF A MODEL OF THE ACTIVE SIDE, Biophysical journal, 71(5), 1996, pp. 2840-2847
We synthesized and studied by Fourier transform infrared spectroscopy
nine monosalts of diamides as models for the active side of aspartic p
roteinases. One compound, the monosalt of meta-aminobenzoic acid diami
de of fumaric acid (m-FUM), shows the same biological activity as peps
in with regard to the splitting of peptide bonds of the Pro-Thr-Glu-Ph
e-Phe(4-NO2)-Arg-Leu heptapeptide. The monosalt of m-FUM forms with ox
indole a complex in which the carboxylic acid group of the monosalt of
m-FUM is strongly hydrogen bonded with the O atom of the peptide bond
of oxindole. When one water molecule is added to this complex, the st
rong field of the caboxylate group destabilizes an O-H bond of the wat
er molecule. The distorted water molecule attacks the carbon atom of t
he peptide group, and the water proton transfers to the peptide N atom
. Simultaneously, the C-N bond of the amide group is broken. Hence it
is demonstrated that the catalytic mechanism of aspartic acid proteina
ses is a base catalysis. The results show that for this catalytic mech
anism there are sufficient carboxylic and carboxylate groups, as well
as a water molecule in the correct arrangement. It was also demonstrat
ed with other monosalts of dicarboxylic acids that well-defined steric
conditions of the carboxylic acid and the carboxylate group must be f
ulfilled to show hydrolytic activity with regard to oxindole molecules
.