The European Pig Gene Mapping Project (PiGMaP) and United States Depar
tment of Agriculture (USDA) porcine linkage maps for chromosomes 3 and
9 have been aligned by typing three USDA microsatellites from chromos
ome 3 and five from chromosome 9 on the PiGMaP reference families. Usi
ng the CRIMAP linkage analysis package, revised multipoint linkage map
s were constructed for chromosome 3 and 9. Inclusion of these USDA mar
kers in the multipoint analysis resulted in an increase in length of 4
7% and 33% respectively for these two PiGMaP linkage groups. This incr
ease in size is mainly the result of extension of the ends of both lin
kage groups.