Objective: To determine the distribution of HIV-1 subtypes in Sao Paul
o, Brazil. Methods: Samples were obtained from 80 consecutive HIV-1-in
fected individuals attending the Immunodeficiency Clinic at the Univer
sity of Sao Paulo in 1993. Peripheral blood mononuclear cells (PBMC) w
ere separated by Ficoll-Hypaque gradient and a portion was used for ro
utine CD4 counts; the remainder were frozen. PBMC were proteinase-K-di
gested and DNA-purified by organic extraction. Samples were amplified
for the env region of HIV, and envelope sequence subtypes determined b
y heteroduplex mobility analysis using prototypic subtypes as referenc
es. A subset of these were also sequenced through the C2-V3 region of
env. Results: A total 69 of 80 samples yielded env polymerase chain re
action product enabling subtype determination; samples that did not am
plify were those with low DNA yields. Among 12 injecting drug users (I
DU) or sexual partners of IDU, four were typed as clade F and eight as
clade B. Forty-three homosexual men or female sexual partners of bise
xual men were typed as clade B. The 14 additional cases without known
risk factors were typed as clade B. Conclusion: These data suggest tha
t subtype F is related to injecting drug use in Brazil.