The effects of laser-induced sample heating and fluorescence of biopol
ymers in Fourier transform-Raman spectroscopy were investigated. It wa
s shown that these two phenomena are essentially independent of each o
ther. Methods of quantifying the laser-induced healing were developed
and it was shown that measurement of the thermal emission generated by
the sample is not sufficient to determine its temperature. The use of
a marker compound mixed with the test sample to estimate the sample t
emperature was explored. Monitoring the temperature-dependent phase tr
ansitions of NH4NO3 provided a crude indication of a minimum sample te
mperature. However, using sulphur as a marker and exploiting the relat
ionship between the intensities of its anti-Stokes and Stokes bands, i
t was possible to estimate the sample temperature with greater confide
nce. Using these techniques it was shown that sample temperatures coul
d easily reach approximately 400 K under normal laser power inputs. Su
ch temperatures are likely to be damaging to biological samples and it
is concluded that great care must be exercised when using FT-Raman.