K. Muellerhill et Dd. Loeb, PREVIOUSLY UNSUSPECTED CIS-ACTING SEQUENCES FOR DNA-REPLICATION REVEALED BY CHARACTERIZATION OF A CHIMERIC HERON DUCK HEPATITIS-B VIRUS/, Journal of virology, 70(12), 1996, pp. 8310-8317
Heron hepatitis B virus (HHBV) is an avian hepadnavirus that is closel
y related to duck hepatitis B virus (DHBV). To learn more about the me
chanism of hepadnavirus replication, we characterized a clone of HHBV
that contains a substitution of DHBV sequence from nucleotide coordina
tes 403 to 1364. This clone, named HDE1, expresses a chimeric pregenom
ic RNA, a chimeric polymerase (P) protein, and a core (C) protein with
a one-amino-acid substitution at its carboxy terminus. We have shown
that HDE1 is defective for minus-strand DNA synthesis, resulting in an
overall reduction of viral DNA, HDE1 was also defective for plus-stra
nd DNA synthesis, resulting in aberrant ratios of replication intermed
iates, Genetic complementation assays indicated that HDE1 replication
proteins, C and P, are functional for replication and wild-type HHBV p
roteins do not rescue either defect, These findings indicate that the
HDE1 substitution mutation acts primarily in cis, By restoring nucleot
ides 403 to 902 to the HHBV sequence, we showed that cis-acting sequen
ces for plus-strand DNA synthesis are located in the 5' half of the HD
E1 chimeric region. These data indicate the presence of one or more fo
rmerly unrecognized cis-acting sequences for DNA synthesis within the
chimeric region (nucleotides 403 to 1364), These cis-acting sequences
in the middle of the genome might interact directly or indirectly with
known cis elements that are located near the ends of the genome. Our
findings suggest that a specific higher-order template structure is in
volved in the mechanism of hepadnavirus DNA replication.