Poly(ADP-ribosyl) transferase (pADPRT) catalyzes the transfer of the A
DP-ribose moiety from NAD(+) onto proteins as well as onto protein-bou
nd ADP-ribose. As a result, protein-bound polymers of ADP-ribose are f
ormed, pADPRT itself contains several acceptor sites for ADP-ribose po
lymers and may attach polymers to itself (automodification). In this s
tudy the influence of substitutions in the purine base of NAD(+) on th
e polymerization reaction was investigated. The adenine moiety of NAD(
+) was replaced by either guanine, hypoxanthine or 1,N-6-ethenoadenine
. These analogs served as substrates for polymer synthesis as judged f
rom the extent of automodification of the enzyme and the sizes of the
polymers formed. Time course experiments revealed that 1,N-6-etheno NA
D(+) (epsilon-NAD(+)) and nicotinamide hypoxanthine dinucleotide (NHD) were rather poor substrates as compared to NAD(+). Synthesis of GDP-
ribose polymers from nicotinamide guanine dinucleotide (NGD(+)) was mo
re efficient, but still significantly slower than poly(ADP-ribosyl)ati
on of the enzyme using NAD(+). The size of the different polymers appe
ared to correlate with these observations. After 30 min of incubation
in the presence of 1 mM substrate, polymers formed from epsilon-NAD(+)
or NHD+ contained up to 30 epsilon-ADP-ribose or IDP-ribose units, re
spectively. Using NGD(+) as substrate polymers consisted of more than
60 GDP-ribose units, an amount similar to that achieved by poly(ADP-ri
bosyl)ation in the presence of only 0.1 mM NAD(+) as substrate. These
results suggest that the presence of an amino group in the purine base
of NAD(+) may facilitate catalysis. Substitution of the nicotinamide
moiety of NAD(+) with 3-acetylpyridine had no detectable effect on pol
ymer formation. Oligomers of GDP-ribose and epsilon-ADP-ribose exhibit
ed a slower mobility in polyacrylamide gels as compared to ADP-ribose
or IDP-ribose oligomers. This feature of the two former analogs as wel
l as their markedly attenuated polymerization by pADPRT provide valuab
le tools for the investigation of the enzymatic mechanism of this prot
ein. Moreover, polymers of epsilon-ADP-ribose may be useful for studyi
ng enzymes degrading poly(ADP-ribose) owing to the fluorescence of thi
s analog. Digestion of epsilon-ADPR polymers with snake venom phosphod
iesterase was accompanied by a significant fluorescence enhancement.