A PARALLEL MOLECULAR-DYNAMICS SIMULATION CODE FOR DIALKYL CATIONIC SURFACTANTS

Citation
M. Surridge et al., A PARALLEL MOLECULAR-DYNAMICS SIMULATION CODE FOR DIALKYL CATIONIC SURFACTANTS, Parallel computing, 22(8), 1996, pp. 1053-1071
Citations number
11
Categorie Soggetti
Computer Sciences","Computer Science Theory & Methods
Journal title
ISSN journal
01678191
Volume
22
Issue
8
Year of publication
1996
Pages
1053 - 1071
Database
ISI
SICI code
0167-8191(1996)22:8<1053:APMSCF>2.0.ZU;2-1
Abstract
We have developed a new simulation code, COMFORT, for the study of ass emblies of flexible surfactant molecules, structured for parallel exec ution and specialised to surfactants with dialkyl chain geometry. The approach is a hybrid domain-decomposition and systolic-loop algorithm which is suitable for systems composed of long chain molecules and wit h tens of thousands of atoms in total. The algorithm uses a modified E wald technique for two dimensionally periodic systems which has been s uccessfully parallelized. The code was designed to be highly portable between machines of different architectures. The code has been tested on a number of platforms including the Intel iPSC/860, the IBM SP1, th e CRAY T3D, a SGI Power Challenge and a number of workstation clusters . We demonstrate that scalable parallel computing technology, combined with appropriate software, can provide a commercially viable simulati on system for use in the exploration and development of surfactant ass emblies.