As part of an investigation of the fixation mechanisms of mtDNA mutati
ons in humans, we sequenced the first hypervariable segment of the con
trol region in 180 twin pairs and found evidence of site heteroplasmy
in 4 pairs. Significant levels of two mitochondrial haplotypes differi
ng by a single point mutation were found in two MZ pairs, and within e
ach pair, both members had similar levels of heteroplasmy. Two DZ pair
s were found in which the predominant mitochondrial haplotype differed
within the pair. We measured proportions of mitochondrial haplotypes
within two twin pairs and their maternal relatives, using primer exten
sion. In both maternal lineages, most family members were heteroplasmi
c, and the proportions of each genotype varied widely in different ind
ividuals. We used the changes in haplotype proportions within mother-o
ffspring pairs to calculate The size range of potential bottlenecks in
mitochondrial numbers occurring during development of the offspring.
In most individuals, the most likely effective bottleneck sizes ranged
from 3 to 20 segregating units, though in two individuals a small bot
tleneck was very unlikely and there was no upper limit on its possible
size. We also used the data from this study, together with unpublishe
d data from other populations, to estimate the frequency of site heter
oplasmy in normal human populations. From this, we calculated that the
rate of mutation and fixation in the first hypervariable segment of t
he human mtDNA control region is between 1.2 x 10(-6) and 2.7 x 10(-5)
per site per generation. This range is in good agreement with publish
ed estimates calculated by other methods.