DNA end-joining, a process related to illegitimate recombination and c
apable of rejoining unrelated pairs of DNA ends in the absence of sequ
ence homology, is considered the major pathway of double-strand break
(DSB) repair in mammalian cells. Whole cell and nuclear extracts from
three human and one mouse cell line were investigated for their capaci
ties to promote nonhomologous DNA end-joining and their relative activ
ities of DNA-PK, a mammalian DNA end-binding protein complex implicate
d in DSB-repair. The levels of DNA end-joining and the spectra of junc
tions of the human systems were identical with the ones of a previousl
y described cell-free joining system derived from Xenopus laevis eggs.
Due to the presence of potent 3'-5'-exonuclease activities the mouse
system displayed decreased levels of DNA end-joining and larger fracti
ons of junctions containing deletions but otherwise the basic mechanis
ms of junction formation appeared to be identical with the Xenopus sys
tem. DNA-PK activity was found to be equally low in the Xenopus and th
e mouse system but 4- to 6-fold increased in the human systems. Our re
sults suggest that the mechanisms of DNA end-joining may be modulated
by the level of exonuclease activities and/or DNA end-protecting facto
rs but are otherwise highly conserved in vertebrate cells.