Most thymocytes are known to be depleted from the thymus during T cell
development, with the process of thymocyte death considered to be apo
ptosis. In this study we examined the mechanism of thymocyte death in
the thymus of 6-week-old mice by using terminal deoxynucleotidyl trans
ferase to detect DNA fragmentation or double strand breaks (TUNEL meth
od). The TUNEL positive thymocytes were scattered throughout the corte
x. Double staining of the section with the TUNEL method and acid phosp
hatase (ACP) activity showed that all the TUNEL positive cells were ph
agocytosed by ACP positive macrophages. An ultrastructural study revea
led the presence of a substantial number of extremely small, unphagocy
tosed thymocytes throughout the cortex. These small unphagocytosed thy
mocytes were apparently dead cells, as based on several morphological
features: 1) The majority were much smaller than red blood cells; 2) t
he nuclei were also considerably small; and 3) the extent of chromatin
condensation was enormous. Importantly, these unphagocytosed dead thy
mocytes were TUNEL negative. These results indicate that: 1) DNA fragm
entation, which is detected by the TUNEL method, is not involved in th
e cell death process of small unphagocytosed dead thymocytes shown in
the present study; and that 2) typical apoptosis, which is characteriz
ed by DNA fragmentation, is not the dominant type of cell death in the
normal murine thymus. Processes of cell death other than typical apop
tosis taking place in most thymocytes require further investigation.