Some TAF subunits of transcription factor TFIID play a pivotal role in
transcriptional activation by mediating protein-protein interactions,
whereas other TAFs direct promoter selectivity via protein-DNA recogn
ition. Here, we report that purified recombinant TAF(II)250 is a prote
in serine kinase that selectively phosphorylates RAP74 but not other b
asal transcription factors or common phosphoacceptor proteins. The pho
sphorylation of RAP74 also occurs in the context of the complete TFIID
complex. Deletion analysis revealed that TAF(II)250 contains two dist
inct kinase domains each capable of autophosphorylation. However, both
the N- and C-terminal kinase domains of TAF(II)250 are required for e
fficient transphosphorylation of RAP74 on serine residues. These findi
ngs suggest that the targeted phosphorylation of RAP74 by TAF(II)250 m
ay provide a mechanism for signaling between components within the ini
tiation complex to regulate transcription.