Soybean hull peroxidase (SBP, E.C. 1.11.1.7), an anionic glycoprotein,
was found to contain 18.2% carbohydrate with the average composition:
2 mol GlcNAc, 3.3 mol Man, 0.9 mol Fuc, and 0.7 mol Xyl, The oligosac
charides of SBP, after release with glycopeptidase A, were investigate
d by a combination of high pH anion exchange chromatography with pulse
d amperometric detection, methylation analysis and matrix assisted las
er desorption/ionization-time-of-flight mass spectrometry. The structu
re of the major oligosaccharide, accounting for 60 to 65% of the total
, is Man alpha 1 --> 6(Man beta 1 --> 3)(Xyl beta 1 --> 2)Man beta 1 -
-> 4GlcNAc beta 1 --> 4(Fuc alpha 1 --> 3)GlcNAc, A further 20 to 25%
of the released oligosaccharides belong to the (Xyl)(x)Man(m)(Fuc)(f)G
lcNAc(2) (m = 2, 4, 5, 6; f = 0 or 1, x = 0 or 1) family, The rest of
the oligosaccharides were of the high-mannose type, Investigation of t
he six tryptic fractions containing carbohydrate revealed considerable
heterogeneity in the N-linked oligosaccharides present in each fracti
on, The major glycan (4, Table III) was present in each fraction, Two
of the fractions contained the major part of the high-mannose type gly
cans, Man(m)GlcNAc(2) (m = 5-9), the major species being Man(7)GlcNAc(
2). The other four fractions contained mainly members of the (Xyl)(x)M
an(m)(Fuc)(f)GlcNAc(2) (m = 2, 4, 5, 6; f = 0 or 1; x = 0 or 1) family
, Methylation analysis of the holo- and apo-SBP provide support for th
e structures proposed for the oligosaccharides as well as for the hete
rogeneity of the glycopeptide fractions.