Transect measurements, continuous monitoring, and synoptic surveys wer
e used to examine pat terns in light availability, temperature, and di
ssolved oxygen concentrations within and outside emergent vegetation z
ones in Goose Lake Marsh, a natural prairie pothole wetland in central
Iowa. Water column light availability was less than 2% of ambient lig
ht in emergent vegetated areas due to canopy cover, small floating pla
nts (lemnids), and plant litter. Water temperatures and dissolved oxyg
en concentrations were significantly lower and varied less diurnally i
n vegetated areas. Three habitat zones could be identified based on pa
tterns in vegetation and dissolved oxygen: (1) a zone of dense emergen
t macrophytes providing significant submerged structure but with nearl
y or completely anoxic water, (2) a transition zone of sparse emergent
macrophytes providing less structure but with more aerobic water, and
(3) an open water zone with consistently aerobic water but with littl
e submerged structure. Vegetation patterns are likely to control major
aspects of wetland biogeochemistry and trophic dynamics, and wetlands
should be viewed as complex mosaics of habitats with distinct structu
ral and functional characteristics.