The combined use of doubled haploid lines and molecular markers can pr
ovide new genetic information for use in breeding programs. An F-1-der
ived doubled haploid (DH) population of Brassica napus obtained from a
cross between an annual canola cultivar ('Stellar') and a biennial ra
peseed ('Major') was used to construct a linkage map of 132 restrictio
n fragment length polymorphism loci. The marker loci were arranged int
o 22 linkage groups and six pairs of linked loci covering 1016 cM. The
DH map was compared to a partial map constructed with a common set of
markers for an F, population derived from the same F-1 plant, and the
overall maps were not significantly different. Comparisons of maps in
Brassica species suggest that less recombination occurs in B. napus (
n = 19) than expected from the combined map distances of the two hypot
hesized diploid progenitors, B. oleracea (n = 9) and B. rapa (n = 10).
A high percentage (32%) of segregating marker loci were duplicated in
the DH map, and conserved linkage arrangements of some duplicated loc
i indicated possible intergenome homoeology in the amphidiploid or int
ragenome duplications from the diploid progenitors. Deviation from Men
delian segregation ratios (P<0.05) was observed for 30% of the marker
loci in the DH population and for 24% in the F-1 population. Deviation
towards each parent occurred at equal frequencies in both populations
and marker loci that showed deviation clustered in specific linkage g
roups. The DH lines and molecular marker map generated for this study
can be used to map loci for agronomic traits segregating in this popul
ation.