C. Bruce et al., PRESENCE OF MULTIPLE GENETIC SUBTYPES OF HUMAN-IMMUNODEFICIENCY-VIRUSTYPE-1 PROVIRUSES IN UGANDA, AIDS research and human retroviruses, 10(11), 1994, pp. 1543-1550
DNA sequences encoding the C2-V3 regions or the C2-V5 regions of the s
urface glycoprotein gp120 of the human immunodeficiency virus type 1 (
HIV-1) were amplified by the polymerase chain reaction (PCR) from peri
pheral blood mononuclear cells obtained in 1990/1992 from 20 infected
Ugandans. The PCR-amplified DNA was cloned into a phagemid vector and
between 1 and 12 clones from each provirus were sequenced. The Ugandan
proviruses were aligned into four subtypes (A, B, C, and D) by phylog
enetic analysis of consensus nucleotide sequences for the C2-V3 region
s. Analysis of the deduced amino acid sequences of the C2-V3 regions b
y a maximum parsimony program gave a similar phylogenetic relationship
. The data indicated that phylogenetic analysis of nucleotide and/or a
mino acid sequences from the C2-V3 regions is a reliable method of sub
type determination. The consensus amino acid sequence of the subtype A
and D proviruses were almost identical to those of the Albert et al.(
1) group B and group A proviruses, respectively. The deduced amino aci
d sequences of the C2-V5 regions of six of these proviruses showed con
siderable diversity both between patients and within patients. The reg
ion varied in length between 234 and 243 amino acids and included dele
tions and repetitions, particularly in the V4 region.