To study the interaction and the role of the metal ion in the reaction
catalyzed by Escherichia coli ribonuclease HI (E. coli RNase HI), sub
strate analogues containing a phosphorothioate linkage or 2'-modified
nucleosides at the cleavage site were used, In the presence of Mg2+, M
n2+, Co2+, Zn2+, or Cd2+, the phosphorothioate linkage with the R(P)-c
onfiguration was cleaved, while the S-P-isomer was not. Kinetic studie
s showed that Mn2+ and Cd2+ facilitated the cleavage of the phosphorot
hioate to only a small extent, which indicated the absence of an inter
action between the metal ion and this phosphate residue. The interacti
on of the metal ion with the 2'-functional group was analyzed by Mg2+-
titration experiments using the -OH, -NH2, and -F substrates. From Hil
l plots, it was found that the K-Mg values were almost the same. These
results are evidence of an interaction between Mg2+ and the 2'-functi
onal group by the formation of an outer-sphere complex with a water mo
lecule. The Hill coefficient of 1.0 for the -OH substrate indicated th
at a single Mg2+ ion is required for the catalysis.