The lactose permease (lac) of Escherichia coli is a paradigm for membr
ane transport proteins. Encoded by the lacY gene, the permease has bee
n solubilized, purified to homogeneity, reconstituted into phospholipi
d vesicles and shown to catalyse the coupled translocation of beta-gra
lactosides and HC with a stoichiometry of unity. Circular dichroism an
d other spectroscopic approaches demonstrate that the purified permeas
e is about 80 % helical. Based on hydropathy analysis of the primary a
mino-acid sequence, a secondary structure has been proposed in which t
he protein has 12 hydrophobic domains in alpha-helical conformation th
at traverse the membrane in zigzag fashion connected by hydrophilic lo
ops. A variety of other approaches are consistent with the model and d
emonstrate that both the N and C termini are on the inner surface of t
he membrane, and studies on an extensive series of lac permease/alkali
ne phosphatase fusion proteins provide exclusive support for the topol
ogical predictions of the 12-helix motif. This presentation concentrat
es on the use of site-directed fluorescence spectroscopy to study stru
cture-function relationships in the permease.