Genetic variability within the blue (Connochaetes taurinus) and black
(C. gnou) wildebeests in South Africa was estimated from allozyme freq
uencies at 31 protein-encoding loci. Seven loci, Ak-1, Alb, Est-D, Icd
h-1, Mpi-1, Pgm-1, and Tf, were polymorphic in the blue wildebeest, bu
t only two loci, Est-D and Tf,were variable in its congener. Average g
ene diversity was H = 0.018 +/- 0.013 in the black wildebeest and was
significantly smaller than that, H = 0.081 +/- 0.030, in the blue wild
ebeest. The reduced level of heterozygosity in black wildebeest is mos
t likely due to a bottleneck in population size in the early 1900s. Th
e genetic distance between the two species was 0.059 +/- 0.027, which
is consistent with an estimate of low mtDNA sequence divergence found
previously.