In vitro selection technology has been used to purify RNA aptamers fro
m a random sequence pool that can bind to, and specifically inhibit, p
rotein kinase C beta IL. Two of the selected RNA aptamers bind to this
isozyme of protein kinase C with nanomolar affinities and inhibit act
ivation with unprecedented selectivity; the highly related, alternativ
ely spliced beta I isozyme, which differs by 23 residues, is inhibited
with 1 order of magnitude lower potency; the next most similar isozym
e, alpha, shows no detectable inhibition. The production of isozyme-sp
ecific inhibitors of protein kinase C opens the possibilities for diss
ecting the roles of specific protein kinase Cs in the myriad of intrac
ellular signaling pathways.