Kj. Prabahar et al., EFFECT OF PHOSPHATE ACTIVATING GROUP ON OLIGONUCLEOTIDE FORMATION ON MONTMORILLONITE - THE REGIOSELECTIVE FORMATION OF 3',5'-LINKED OLIGOADENYLATES, Journal of the American Chemical Society, 116(24), 1994, pp. 10914-10920
The effects of amine structure on the montmorillonite-catalyzed oligom
erization of the 5'-phosphoramidates of adenosine are investigated. 4-
Aminopyridine derivatives yielded oligoadenylates as long as dodecamer
s with a regioselectivity for 3',5'-phosphodiester bond formation aver
aging 88%. Linear and cyclic oligomers are obtained and no A(5')ppA-co
ntaining products are detected. Oligomers as long as the hexanucleotid
e are obtained using 2-aminobenzimidazole as the activating group. A p
redominance of pA(2')pA is detected in the dimer fraction along with c
yclic 3',5'-trimer; no A(5')ppA-containing oligomers were detected. Li
ttle or no oligomer formation was observed when morpholine, piperidine
, pyrazole, 1,2,4-triazole, and 2-pyridone are used as phosphate-activ
ating groups. The effects of the structure of the phosphate activating
group on the oligomer structure and chain lengths are discussed.